PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G110100.1
Common NameB456_005G110100, LOC105793807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 240aa    MW: 26584 Da    PI: 5.3108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G110100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1965114255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Gorai.005G110100.1  65 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 114
                         69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.68E-2264124No hitNo description
PROSITE profilePS5103222.56365122IPR001471AP2/ERF domain
SMARTSM003802.7E-3665128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3065123IPR001471AP2/ERF domain
PfamPF008474.3E-1465114IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2165122IPR016177DNA-binding domain
PRINTSPR003677.0E-106677IPR001471AP2/ERF domain
PRINTSPR003677.0E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MCLSVINHFL SSPFPYSPQV PCWNNVNIND GWWLWRKKQA RKPAQASSRK GCMRGKGGPE  60
NALCTYKGVR QRTWGKWVAE IREPNRGARL WLGTFDTSHE AAMAYDAAAR KLYGSDAKLN  120
LPELCANNPQ SQPSSAANPQ MAPMVNYQPQ NVSNSVMPSF PNESIDLQGN VDAKFGQITE  180
DGIEGFWENM NANLPLLDDS IWAETAMSLE FPMMGDPGSF ASNLMEATGW DALQSPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1766122360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478107.11e-179PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ27e-59DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0D2SEG71e-179A0A0D2SEG7_G
STRINGPOPTR_0005s25470.17e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-60ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]